Description Usage Arguments Value Examples
Import 2D-TPP dataset main function
1 2 3 4 5 6 7 8 9 10 11 | import2dMain(
configTable,
data,
idVar,
fcStr,
addCol,
naStrs,
intensityStr,
qualColName,
nonZeroCols
)
|
configTable |
character string of a file path to a config table |
data |
possible list of datasets from different MS runs corresponding to a 2D-TPP dataset, circumvents loading datasets referencend in config table, default is NULL |
idVar |
character string indicating which data column provides the unique identifiers for each protein. |
fcStr |
character string indicating which columns contain the actual
fold change values. Those column names containing the suffix |
addCol |
character string indicating additional column to import |
naStrs |
character vector indicating missing values in the data table.
When reading data from file, this value will be passed on to the argument
|
intensityStr |
character string indicating which columns contain raw intensities measurements |
qualColName |
character string indicating which column can be used for additional quality criteria when deciding between different non-unique protein identifiers. |
nonZeroCols |
column like default qssm that should be imported and requested to be non-zero in analyzed data |
list of data frames containing different datasets
1 2 3 4 5 6 7 8 9 10 11 | data("config_tab")
data("raw_dat_list")
dataList <- import2dMain(configTable = config_tab,
data = raw_dat_list,
idVar = "protein_id",
fcStr = "rel_fc_",
addCol = "gene_name",
naStrs = NA,
intensityStr = "signal_sum_",
nonZeroCols = "qusm",
qualColName = "qupm")
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.