Files in TPP2D

Detection of ligand-protein interactions from 2D thermal profiles (DLPTP)

README.md R/fdr_funcs.R R/import_funcs.R R/outlier_filtering.R R/optimization.R R/prepare_data.R R/null_bootstrap_funcs.R R/full_analysis.R R/helper_funcs.R R/perform_analysis.R R/data.R R/plot_funcs.R R/estimate_params.R R/TPP2D-defunct.R R/tpp2dExperiment-class.R vignettes/TPP2D.Rmd man/getFDR.Rd man/runTPP2D.Rd man/TPP_importCheckConfigTable.Rd man/raw_dat_list.Rd man/plot2dTppRelProfile.Rd man/computeFStatFromParams.Rd man/competeModels.Rd man/import2dMain.Rd man/recomputeSignalFromRatios.Rd man/configWide2Long.Rd man/config_tab.Rd man/plot2dTppProfile.Rd man/filterOutContaminants.Rd man/findHits.Rd man/getPvalues.Rd man/gg_qq.Rd man/fitH0Model.Rd man/bootstrapNullAlternativeModel.Rd man/fitH1Model.Rd man/plot2dTppVolcano.Rd man/simulated_cell_extract_df.Rd man/getModelParamsDf.Rd man/TPP2D-defunct.Rd man/resolveAmbiguousProteinNames.Rd man/plot2dTppFit.Rd man/renameColumns.Rd man/computeFstat.Rd man/import2dDataset.Rd man/fitAndEvalDataset.Rd man/bootstrapNull.Rd man/tpp2dExperiment-class.Rd man/annotateDataList.Rd man/getPEC504Temperature.Rd man/plot2dTppFcHeatmap.Rd man/computeFdr-defunct.Rd tests/testthat.R tests/testthat/test-compute-F-stat-from-params.R tests/testthat/test-recompute-signal.R tests/testthat/test-plotting-funcs.R tests/testthat/test-import-raw-data.R tests/testthat/test-get-model-params-df.R tests/testthat/test-fits.R tests/testthat/test-bootstrap-null.R tests/testthat/test-resolveAmbiguousProteinNames.R tests/testthat/setup-raw-2dtpp-dataset.R tests/testthat/setup-2dtpp-dataset.R tests/testthat/test-compete-models.R inst/doc/TPP2D.Rmd inst/doc/TPP2D.R