has.stages: has stages

In TRONCO: TRONCO, an R package for TRanslational ONCOlogy

Description

Return true if the TRONCO dataset 'x', which should be a TRONCO compliant dataset - see is.compliant - has stage annotations for samples. Some sample stages might be annotated as NA, but not all.

Usage

has.stages(x)

Arguments

x	A TRONCO compliant dataset.

Value

TRUE if the TRONCO dataset has stage annotations for samples.

Examples

data(test_dataset)
has.stages(test_dataset)
data(stage)
test_dataset = annotate.stages(test_dataset, stage)
has.stages(test_dataset)

TRONCO documentation built on Nov. 8, 2020, 5:51 p.m.