hypothesis.add.group: hypothesis add group

In TRONCO: TRONCO, an R package for TRanslational ONCOlogy

Description

Add all the hypotheses related to a group of events

Usage

hypothesis.add.group(
  x,
  FUN,
  group,
  pattern.cause = "*",
  pattern.effect = "*",
  dim.min = 2,
  dim.max = length(group),
  min.prob = 0,
  silent = FALSE
)

Arguments

x	A TRONCO compliant dataset.
FUN	Type of pattern to be added, e.g., co-occurance, soft or hard exclusivity.
group	Group of events to be considered.
pattern.cause	Possibile causes for the pattern.
pattern.effect	Possibile effects for the pattern.
dim.min	Minimum cardinality of the subgroups to be considered.
dim.max	Maximum cardinality of the subgroups to be considered.
min.prob	Minimum probability associated to each valid group.
silent	A parameter to disable/enable verbose messages.

Value

A TRONCO compliant object with the added hypotheses

TRONCO documentation built on Nov. 8, 2020, 5:51 p.m.