hypothesis.add.homologous: hypothesis.add.homologous

In TRONCO: TRONCO, an R package for TRanslational ONCOlogy

Description

Add all the hypotheses related to homologou events

Usage

hypothesis.add.homologous(
  x,
  pattern.cause = "*",
  pattern.effect = "*",
  genes = as.genes(x),
  silent = FALSE
)

Arguments

x	A TRONCO compliant dataset.
pattern.cause	Possibile causes for the pattern.
pattern.effect	Possibile effects for the pattern.
genes	List of genes to be considered as possible homologous. For these genes, all the types of mutations will be considered functionally equivalent.
silent	A parameter to disable/enable verbose messages.

Value

A TRONCO compliant object with the added hypotheses

TRONCO documentation built on Nov. 8, 2020, 5:51 p.m.