join.types: join.types

In TRONCO: TRONCO, an R package for TRanslational ONCOlogy

Description

For an input dataset merge all the events of two or more distincit types (e.g., say that missense and indel mutations are events of a unique "mutation" type)

Usage

join.types(x, ..., new.type = "new.type", new.color = "khaki", silent = FALSE)

Arguments

x	A TRONCO compliant dataset.
...	type to merge
new.type	label for the new type to create
new.color	color for the new type to create
silent	A parameter to disable/enable verbose messages.

Value

A TRONCO compliant dataset.

Examples

data(test_dataset_no_hypos)
join.types(test_dataset_no_hypos, 'ins_del', 'missense_point_mutations')
join.types(test_dataset_no_hypos, 'ins_del',
     'missense_point_mutations', new.type='mut', new.color='green')

TRONCO documentation built on Nov. 8, 2020, 5:51 p.m.