dot-getSummaryBam: Summarize BAM file

Description Usage Arguments Value

Description

Get summary of interesting bam statistics

Usage

1
.getSummaryBam(bam_file, mapped = TRUE, secondary = FALSE)

Arguments

bam_file

Path for the bam file.

mapped

Logical indicating whether to extract mapped reads.

secondary

Logical indicating whether to extract secondary aligned reads.

Value

Returns a numeric containing the number of reads in bam_file that has the specified mapped and secondary status.


UMI4Cats documentation built on Dec. 31, 2020, 2:01 a.m.