plotTrend: Plot adaptative smoothen trend
In UMI4Cats: UMI4Cats: Processing, analysis and visualization of UMI-4C chromatin contact data
Description
Usage
Arguments
Value
Examples
Description
Plot adaptative smoothen trend
Usage
1
Arguments
umi4c
UMI4C object as generated by makeUMI4C.
grouping
Grouping used for the different samples. If none available or
want to add new groupings, run addGrouping.
colors
Named vector of colors to use for plotting for each group.
xlim
Limits for the plot x axis (genomic coordinates).
ylim
Limits of the trend y axis.
Value
Produces the adaptative trend plot, showing average UMIs at each
position taking into account the minimum number of molecules used to merge
restriction fragments.
Examples
1
2
3
data("ex_ciita_umi4c")
plotTrend(ex_ciita_umi4c)
UMI4Cats documentation built on Dec. 31, 2020, 2:01 a.m.
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Description Usage Arguments Value Examples
Description
Plot adaptative smoothen trend
Usage
1 |
Arguments
umi4c |
UMI4C object as generated by |
grouping |
Grouping used for the different samples. If none available or
want to add new groupings, run |
colors |
Named vector of colors to use for plotting for each group. |
xlim |
Limits for the plot x axis (genomic coordinates). |
ylim |
Limits of the trend y axis. |
Value
Produces the adaptative trend plot, showing average UMIs at each position taking into account the minimum number of molecules used to merge restriction fragments.
Examples
1 2 3 | data("ex_ciita_umi4c")
plotTrend(ex_ciita_umi4c)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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