plotTrend: Plot adaptative smoothen trend

Description Usage Arguments Value Examples

Description

Plot adaptative smoothen trend

Usage

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Arguments

umi4c

UMI4C object as generated by makeUMI4C.

grouping

Grouping used for the different samples. If none available or want to add new groupings, run addGrouping.

colors

Named vector of colors to use for plotting for each group.

xlim

Limits for the plot x axis (genomic coordinates).

ylim

Limits of the trend y axis.

Value

Produces the adaptative trend plot, showing average UMIs at each position taking into account the minimum number of molecules used to merge restriction fragments.

Examples

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data("ex_ciita_umi4c")

plotTrend(ex_ciita_umi4c)

UMI4Cats documentation built on Dec. 31, 2020, 2:01 a.m.