calculateAdaptativeTrend: Adaptative smoothing of normalized trend
In UMI4Cats: UMI4Cats: Processing, analysis and visualization of UMI-4C chromatin contact data
Description
Usage
Arguments
Value
Description
Will perform adaptative smoothing will scaling one profile to the reference
UMI-4C profile.
Usage
1
calculateAdaptativeTrend(umi4c, sd = 2, normalized = TRUE)
Arguments
umi4c
UMI4C object as generated by makeUMI4C.
sd
Stantard deviation for adaptative trend.
normalized
Logical indicating whether UMI-4C profiles should be
normalized to the ref_umi4c sample/group. Default: TRUE
Value
Calculates the adaptative trend considering the minimum number of
molecules to use for merging different restriction fragments. It also
calculates the geometric mean of the coordinates of the merged restriction
fragments.
UMI4Cats documentation built on Dec. 31, 2020, 2:01 a.m.
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Description Usage Arguments Value
Description
Will perform adaptative smoothing will scaling one profile to the reference UMI-4C profile.
Usage
1 | calculateAdaptativeTrend(umi4c, sd = 2, normalized = TRUE)
|
Arguments
umi4c |
UMI4C object as generated by |
sd |
Stantard deviation for adaptative trend. |
normalized |
Logical indicating whether UMI-4C profiles should be
normalized to the |
Value
Calculates the adaptative trend considering the minimum number of molecules to use for merging different restriction fragments. It also calculates the geometric mean of the coordinates of the merged restriction fragments.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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