calculateDomainogram: Create Domainogram

In UMI4Cats: UMI4Cats: Processing, analysis and visualization of UMI-4C chromatin contact data

Description

Using as input the raw UMIs, this function creates a domainogram for the supplied scales.

Usage

calculateDomainogram(umi4c, scales = 5:150, normalized = TRUE)

Arguments

umi4c	UMI4C object as generated by makeUMI4C.
scales	Integer vector indicating the number of scales to use for the domainogram creation. Default: 5:150.
normalized	Logical whether the the resulting domainograms should be normalized or not. Default: TRUE.

Value

A matrix where the first column represents the fragment end coordinates (start) and the rest represent the number of UMIs found when using a specific scale.

UMI4Cats documentation built on Dec. 31, 2020, 2:01 a.m.