Man pages for Uniquorn
Identification of cancer cell lines based on their weighted mutational/ variational fingerprint

add_custom_vcf_to_databaseadd_custom_vcf_to_database This function adds the variants of...
add_missing_clsadd_missing_cls
add_penality_statisticsadd_penalty_statistics
add_p_q_values_statisticsadd_p_q_values_statistics
create_bed_filecreate_bed_file
identify_vcf_fileidentify_VCF_file
init_and_load_identificationinit_and_load_identification
initiate_canonical_databasesinitiate_canonical_databases
match_query_ccl_to_databasematch_query_ccl_to_database
parse_ccle_genotype_dataparse_ccle_genotype_data
parse_cosmic_genotype_dataparse_cosmic_genotype_data
parse_vcf_fileFilter Parsed VCF Files
parse_vcf_query_into_dbparse_vcf_query_into_db This function adds the variants of...
read_library_namesLibrary Name Reader
read_mutation_grange_objectsread_mutation_grange_objects
remove_ccls_from_databaseRemove Cancer Cell Line
remove_library_from_databaseRemove entire Library from Database
show_contained_cclsshow_contained_ccls
show_contained_variants_for_cclVariants In Cancer Cell Line
show_contained_variants_in_libraryAll variants contained in reference library
show_which_ccls_contain_variantCancer cell lines with specific variant
Uniquorn documentation built on May 2, 2018, 4:20 a.m.