initiate_canonical_databases: initiate_canonical_databases
In Uniquorn: Identification of cancer cell lines based on their weighted mutational/ variational fingerprint
Description
Usage
Arguments
Value
Examples
View source: R/Parse_COSMIC_CCLE_CCLs.R
Description
Parses data into r list variable
Usage
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initiate_canonical_databases(
cosmic_file = "CosmicCLP_MutantExport.tsv",
ccle_file = "CCLE_hybrid_capture1650_hg19_NoCommonSNPs_CDS_2012.05.07.maf",
ref_gen = "GRCH37"
)
Arguments
cosmic_file
The path to the cosmic DNA genotype data file.
Ensure that the right reference genome is used
ccle_file
The path to the ccle DNA genotype data file.
Ensure that the right reference genome is used
ref_gen
Reference genome version
Value
Returns message if parsing process has succeeded
Examples
1
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3
4
5
initiate_canonical_databases(
cosmic_file = "CosmicCLP_MutantExport.tsv",
ccle_file = "CCLE_hybrid_capture1650_hg19_NoCommonSNPs_CDS_2012.05.07.maf",
ref_gen = "GRCH37"
)
Uniquorn documentation built on Nov. 8, 2020, 8:07 p.m.
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Description Usage Arguments Value Examples
View source: R/Parse_COSMIC_CCLE_CCLs.R
Description
Parses data into r list variable
Usage
1 2 3 4 5 | initiate_canonical_databases(
cosmic_file = "CosmicCLP_MutantExport.tsv",
ccle_file = "CCLE_hybrid_capture1650_hg19_NoCommonSNPs_CDS_2012.05.07.maf",
ref_gen = "GRCH37"
)
|
Arguments
cosmic_file |
The path to the cosmic DNA genotype data file. Ensure that the right reference genome is used |
ccle_file |
The path to the ccle DNA genotype data file. Ensure that the right reference genome is used |
ref_gen |
Reference genome version |
Value
Returns message if parsing process has succeeded
Examples
1 2 3 4 5 | initiate_canonical_databases(
cosmic_file = "CosmicCLP_MutantExport.tsv",
ccle_file = "CCLE_hybrid_capture1650_hg19_NoCommonSNPs_CDS_2012.05.07.maf",
ref_gen = "GRCH37"
)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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