match_query_ccl_to_database: match_query_ccl_to_database

Description Usage Arguments Value

View source: R/Match_query_ccl_with_database.R

Description

Matches query ccl to the database

Usage

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match_query_ccl_to_database(g_query, ref_gen = "GRCH37", library_name,
  mutational_weight_inclusion_threshold)

Arguments

g_query

IRanges object that contains the variants

ref_gen

Reference genome version. All training sets are associated with a reference genome version. Default: GRCH37

library_name

a character string giving the name of the library

mutational_weight_inclusion_threshold

a numerical giving the lower bound for mutational weight to be included

Value

The R Table sim_list which contains the CoSMIC CLP fingerprints


Uniquorn documentation built on Nov. 8, 2020, 8:07 p.m.