plotExchangeSpectra: Plot the spectra of nucleotide exchanges

Description Usage Arguments Value See Also Examples

View source: R/plot_functions.R

Description

Plots the spectra of nucleotide exchanges in their triplet contexts. If several columns are present in the input data frame, the spectra are plotted for every column separately.

Usage

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plotExchangeSpectra(
  in_catalogue_df,
  in_colour_vector = NULL,
  in_show_triplets = FALSE,
  in_show_axis_title = FALSE,
  in_scales = "free_x",
  in_refLine = NULL,
  in_refAlpha = 0.5,
  in_background = NULL
)

Arguments

in_catalogue_df

Numerical data frame encoding the exchange spectra to be displayed, either a mutational catalogue V or a signatures matrix W.

in_colour_vector

Specifies the colours of the 6 nucleotide exchanges if non-null.

in_show_triplets

Whether or not to show the triplets on the x-axis

in_show_axis_title

Whether or not to show the name of the y-axis

in_scales

Argument passed on to facet_grid

in_refLine

If non-null, value on the y-axis at which a horizontal line is to be drawn

in_refAlpha

Transparency of the horizontal line if it is to be drawn

in_background

Option to provide a background theme, e.g. theme_grey

Value

The generated barplot - a ggplot2 plot

See Also

geom_bar

facet_grid

Examples

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YAPSA documentation built on Nov. 8, 2020, 4:59 p.m.