run_comparison_general: Compare all strata from different stratifications

In YAPSA: Yet Another Package for Signature Analysis

Description

Compare all strata from different orthogonal stratification axes, i.e. othogonal SMCs by cosine similarity of signature exposures. Function similar to compare_SMCs, but without calling plot_strata. First calls

• make_strata_df, then

• make_comparison_matrix

Usage

run_comparison_general(
  in_stratification_lists_list,
  output_path = NULL,
  in_nrect = 5,
  in_attribute = "",
  in_remove_signature_ind = NULL,
  in_additional_stratum = NULL
)

Arguments

in_stratification_lists_list	List of lists with entries from different (orthogonal) stratification axes or SMCs
output_path	Path to directory where the results, especially the figure produced by corrplot is going to be stored.
in_nrect	Number of clusters in the clustering procedure provided by corrplot
in_attribute	Additional string for the file name where the figure produced by corrplot is going to be stored.
in_remove_signature_ind	Omit one of the signatures in in_signatures_ind_df for the comparison if non-NULL. The parameter specifies the index of the signature to be removed.
in_additional_stratum	Include an additionally supplied stratum in comparison in non-NULL.

Value

The comparison matrix of cosine similarities.

See Also

make_comparison_matrix

compare_SMCs

run_comparison_catalogues

Examples

 NULL

YAPSA documentation built on Nov. 8, 2020, 4:59 p.m.