transform_rownames_R_to_MATLAB: Change rownames from one naming convention to another

In YAPSA: Yet Another Package for Signature Analysis

Description

Rownames or names of the features used differ between the different contexts a signature analysis is carried out in. The function transform_rownames_R_to_MATLAB changes from the convention used in the YAPSA pacakge to the one used by Alexandrov et al. in the MATLAB framework.

The function transform_rownames_MATLAB_to_R changes from the convention used in Alexandrov et al. in the MATLAB framework to the one used by the YAPSA pacakge.

The function transform_rownames_MATLAB_to_R changes from the convention used in stored mutational catalogues by Alexandrov et al. to the one used by the YAPSA pacakge.

The function transform_rownames_YAPSA_to_deconstructSigs changes from the convention used in the YAPSA package to the one used by the deconstructSigs package.

The function transform_rownames_YAPSA_to_deconstructSigs changes from the convention used in the deconstructSigs package to the one used by the YAPSA pacakge.

Usage

transform_rownames_R_to_MATLAB(in_rownames, wordLength = 3)

transform_rownames_MATLAB_to_R(in_rownames, wordLength = 3)

transform_rownames_nature_to_R(in_rownames, wordLength = 3)

transform_rownames_YAPSA_to_deconstructSigs(in_rownames, wordLength = 3)

transform_rownames_deconstructSigs_to_YAPSA(in_rownames, wordLength = 3)

Arguments

in_rownames	Character vector of input rownames
wordLength	Size of the considered motif context

Value

A character vector of the translated rownames.

Examples

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YAPSA documentation built on Nov. 8, 2020, 4:59 p.m.