Files in affy
Methods for Affymetrix Oligonucleotide Arrays
configure.in
configure
NEWS
changelog
NAMESPACE
DESCRIPTION
cleanup
aclocal.m4
build/vignette.rds
src/chipbackground.c
src/getall_locations.c
src/Makevars.win
src/rma_common.h
src/rma_common.c
src/Makevars.in
src/rma2.c
src/mas5calls.c
data/mapCdfName.rda
data/SpikeIn.rda
data/cdfenv.example.rda
R/bg.R
R/merge.AffyBatch.R
R/summary.R
R/read.affybatch.R
R/ppsetApply.R
R/plot.ProbeSet.R
R/generateExprVal.method.liwong.R
R/AffyBatch.R
R/loess.normalize.R
R/normalize.constant.R
R/ppset.ttest.R
R/ProgressBarText.R
R/tukey.biweight.R
R/normalize.loess.R
R/normalize.quantiles.R
R/generateExprVal.method.avgdiff.R
R/hlog.R
R/avdiff.R
R/barplot.ProbeSet.R
R/mva.pairs.R
R/rma.R
R/pmcorrect.mas.R
R/xy2indices.R
R/AffyRNAdeg.R
R/ProbeSet.R
R/mas5.R
R/getCDFenv.R
R/whatcdf.R
R/justrma.R
R/zzz.R
R/plot.density.R
R/generateExprVal.method.medianpolish.R
R/normalize.qspline.R
R/plotLocation.R
R/fit.li.wong.R
R/generateExprVal.method.mas.R
R/generateExprVal.method.playerout.R
R/normalize.invariantset.R
R/expressoWidget.R
R/pairs.AffyBatch.R
R/maffy.R
R/bg.Affy.chipwide.R
R/normalize.contrasts.R
R/expresso.R
demo/affy.tour.R
demo/00Index
vignettes/image.png
vignettes/affy.Rnw
vignettes/builtinMethods.Rnw
vignettes/widget2.ps
vignettes/widgetfilechooser.png
vignettes/customMethods.Rnw
vignettes/EWSnap.png
vignettes/vim.Rnw
vignettes/widget1.ps
vignettes/affy.bib
man/whatcdf.Rd
man/xy2indices.Rd
man/normalize.invariantset.Rd
man/list.celfiles.Rd
man/plot.ProbeSet.Rd
man/normalize.loess.Rd
man/plot.density.Rd
man/affy-deprecated.Rd
man/normalize.contrast.Rd
man/hlog.Rd
man/normalize-methods.Rd
man/AffyRNAdeg.Rd
man/cdfenv.example.Rd
man/normalize.constant.Rd
man/cleancdfname.Rd
man/generateExprSet-methods.Rd
man/barplot.ProbeSet.Rd
man/normalize.quantiles.Rd
man/setAffyOptions.Rd
man/probeMatch-methods.Rd
man/ProgressBarText-class.Rd
man/tukey.biweight.Rd
man/read.affybatch.Rd
man/justrma.Rd
man/expresso.Rd
man/affy-options.Rd
man/generateExprVal.method.playerout.Rd
man/expressoWidget.Rd
man/bg.adjust.Rd
man/generateExprVal-methods.Rd
man/affy.scalevalue.exprSet.Rd
man/bgc.Rd
man/merge.AffyBatch.Rd
man/plotLocation.Rd
man/mas5calls.Rd
man/summary.Rd
man/maffy.subset.Rd
man/fit.li.wong.Rd
man/AffyBatch-class.Rd
man/read.probematrix.Rd
man/probeNames-methods.Rd
man/pmcorrect.Rd
man/rma.Rd
man/generateExprVal.method.avgdiff.Rd
man/normalize.quantiles.robust.Rd
man/mas5.Rd
man/ProbeSet-class.Rd
man/MAplot.Rd
man/ppsetApply.Rd
man/normalize.qspline.Rd
man/SpikeIn.Rd
man/cdfFromBioC.Rd
man/debug.affy123.Rd
man/mva.pairs.Rd
man/pairs.AffyBatch.Rd
inst/CITATION
inst/doc/affy.Rnw
inst/doc/builtinMethods.Rnw
inst/doc/affy.R
inst/doc/customMethods.R
inst/doc/vim.R
inst/doc/customMethods.Rnw
inst/doc/vim.Rnw
inst/doc/affy.pdf
inst/doc/builtinMethods.pdf
inst/doc/vim.pdf
inst/doc/builtinMethods.R
inst/doc/customMethods.pdf
inst/tests/expression.values.R
inst/tests/normalize.methods.R
inst/tests/bg.correct.R
inst/tests/affybatch.R
