| aaf.character | Generic constructor for classes extending character |
| aafChromLoc | Constructor for aafChromLoc objects |
| aafChromLoc-class | Class aafChromLoc, a class for gene chromosome locations |
| aafChromosome | Constructor for aafChromosome objects |
| aafChromosome-class | Class aafChromosome, a class for gene chromosome assignments |
| aafCytoband | Constructor for aafCytoband objects |
| aafCytoband-class | Class aafCytoband, a class for cytoband data |
| aafDescription | Constructor for aafDescription objects |
| aafDescription-class | Class aafDescription, a class for gene descriptions |
| aafExpr | Sample ExpressionSet used for demonstration purposes |
| aafGenBank | Constructor for aafGenBank objects |
| aafGenBank-class | Class aafGenBank, a class for GenBank accession numbers |
| aafGO | Constructor for aafGO objects |
| aafGO-class | Class aafGO, a class for gene ontology ids |
| aafGOItem-class | Class aafGOItem, a class for gene ontology id elements |
| aaf.goterm | Fetch Gene Ontology term information |
| aaf.handler | Handle feching annotation data columns |
| aaf.integer | Generic constructor for classes extending integer |
| aafIntensity-class | Class aafIntensity, a class for gene expression values |
| aafList-class | Class aafList, a specialized subclass of list |
| aafLocusLink | Constructor for aafLocusLink objects |
| aafLocusLink-class | Class aafLocusLink, a class for LocusLink ids |
| aafPathway | Constructor for aafPathway objects |
| aafPathway-class | Class aafPathway, a class for KEGG pathway ids |
| aafPathwayItem-class | Class aafPathwayItem, a class for KEGG pathway id elements |
| aafProbe | Constructor for aafProbe objects |
| aafProbe-class | Class aafProbe, a class for Probe ids |
| aafPubMed | Constructor for aafPubMed objects |
| aafPubMed-class | Class aafPubMed, a class for PubMed ids |
| aaf.raw | Fetch raw annotation data |
| aafSearchGO | Find probe ids corresponding to GO ids |
| aafSearchText | Search metadata annotation text |
| aafSigned-class | Class aafSigned, a class for signed numerical data |
| aafSymbol | Constructor for aafSymbol objects |
| aafSymbol-class | Class aafSymbol, a class for gene symbols |
| aafTable | Constructor for aafTable objects |
| aafTableAnn | Constructor for aafTable objects from annotation data |
| aafTable-class | Class aafTable, a tabular microarray data class |
| aafTableFrame | Constructor for aafTable objects from data frames |
| aafTableInt | Constructor for aafTable objects from ExpressionSets |
| aafUniGene | Constructor for aafUniGene objects |
| aafUniGene-class | Class aafUniGene, a class for UniGene cluster ids |
| chkPkgs | A Function to Check for and Install Missing Annotation... |
| getCSS-methods | Methods for function getCSS |
| getHTML-methods | Methods for function getHTML |
| getTD-methods | Methods for function getTD |
| getText-methods | Methods for function getText |
| getURL-methods | Methods for function getURL |
| is.annpkg | Determine if packages contain annotation |
| selectorWidget | Dialog to select items from a list |
