aafPathway-class: Class aafPathway, a class for KEGG pathway ids

In annaffy: Annotation tools for Affymetrix biological metadata

Description

An abstraction for KEGG pathway ids from Bioconductor data packages. This class is actually extends aafList and holds aafPathwayItem objects which have the actual annotation data.

Objects from the Class

Objects are generally created by the aafPathway constructor. Objects can also be created manually by calls of the form new("aafPathway", list(pathwayitems)).

Slots

.Data:

Object of class list

Extends

Class aafList, from data part.

Methods

getText

(aafGO): Returns a comma delimeted list of the individual aafPathwayItem objects.

getURL

(aafGO): Returns zero length character vector because this method is not valid for this class.

getHTML

(aafGO): Returns an HTML representation of each of the individual aafPathwayItem objects, concatenated together.

getTD

(aafGO): Returns an HTML table cell representation with the class set to "aafPathway".

getCSS

(aafGO): Returns a line of CSS which intends PathwayItem paragraphs.

Author(s)

Colin A. Smith, [e-mail]

See Also

aafPathway, aafPathwayItem, aafList

annaffy documentation built on Nov. 8, 2020, 8:02 p.m.