API for ballgown
Flexible, isoform-level differential expression analysis
| Global functions | |
|---|---|
| .makepretty | Source code |
| .readExon | Source code |
| .readIntron | Source code |
| .readTranscript | Source code |
| Ballgown | Man page |
| annotate_assembly | Man page Source code |
| assessSim | Source code |
| ballgown | Man page Source code |
| ballgown-class | Man page |
| ballgown-constructor | Man page |
| ballgown-package | Man page |
| ballgownp | Man page |
| ballgownrsem | Man page Source code |
| bg | Man page |
| checkAssembledTx | Man page Source code |
| closestColor | Source code |
| clusterTranscripts | Man page Source code |
| collapseTranscripts | Man page Source code |
| contains | Man page Source code |
| dirs | Man page Man page |
| dirs,ballgown-method | Man page |
| eexpr | Man page Man page |
| eexpr,ballgown-method | Man page |
| expr | Man page Man page |
| expr,ballgown-method | Man page |
| expr<- | Man page Man page |
| expr<-,ballgown-method | Man page |
| exprfilter | Man page Source code |
| geneIDs | Man page Man page |
| geneIDs,ballgown-method | Man page |
| geneNames | Man page Man page |
| geneNames,ballgown-method | Man page |
| getAttributeField | Man page |
| getGenes | Man page Source code |
| gexpr | Man page Man page |
| gexpr,ballgown-method | Man page |
| gffRead | Man page |
| gffReadGR | Man page Source code |
| half2 | Source code |
| iexpr | Man page Man page |
| iexpr,ballgown-method | Man page |
| indexes | Man page Man page |
| indexes,ballgown-method | Man page |
| indexes<- | Man page Man page |
| indexes<-,ballgown-method | Man page |
| last | Man page Source code |
| match.data.frame | Source code |
| mergedDate | Man page Man page |
| mergedDate,ballgown-method | Man page |
| pData | Man page Man page |
| pData,ballgown-method | Man page |
| pData<- | Man page Man page |
| pData<-,ballgown,ANY-method | Man page |
| pctOverlap | Man page Source code |
| plotLatentTranscripts | Man page Source code |
| plotMeans | Man page Source code |
| plotTranscripts | Man page Source code |
| sampleNames | Man page Man page |
| sampleNames,ballgown-method | Man page |
| seqnames | Man page Man page |
| seqnames,ballgown-method | Man page |
| ss | Source code |
| stattest | Man page Source code |
| strip_quotes | Source code |
| structure | Man page Man page |
| structure,ballgown-method | Man page |
| subset | Man page Man page |
| subset,ballgown-method | Man page |
| tGene | Man page Source code |
| texpr | Man page Man page |
| texpr,ballgown-method | Man page |
| transcriptIDs | Man page Man page |
| transcriptIDs,ballgown-method | Man page |
| transcriptNames | Man page Man page |
| transcriptNames,ballgown-method | Man page |
| writeFiles | Man page Source code |
