API for ballgown
Flexible, isoform-level differential expression analysis

Global functions
Ballgown Man page
annotate_assembly Man page Source code
assessSim Source code
ballgown Man page Source code
ballgown-class Man page
ballgown-constructor Man page
ballgown-package Man page
ballgownp Man page
ballgownrsem Man page Source code
bg Man page
checkAssembledTx Man page Source code
closestColor Source code
clusterTranscripts Man page Source code
collapseTranscripts Man page Source code
contains Man page Source code
dirs Man page Man page
dirs,ballgown-method Man page
eexpr Man page Man page
eexpr,ballgown-method Man page
expr Man page Man page
expr,ballgown-method Man page
expr<- Man page Man page
expr<-,ballgown-method Man page
exprfilter Man page Source code
geneIDs Man page Man page
geneIDs,ballgown-method Man page
geneNames Man page Man page
geneNames,ballgown-method Man page
getAttributeField Man page Source code
getGenes Man page Source code
gexpr Man page Man page
gexpr,ballgown-method Man page
gffRead Man page Source code
gffReadGR Man page Source code
half2 Source code
iexpr Man page Man page
iexpr,ballgown-method Man page
indexes Man page Man page
indexes,ballgown-method Man page
indexes<- Man page Man page
indexes<-,ballgown-method Man page
last Man page Source code
makepretty Source code
match.data.frame Source code
mergedDate Man page Man page
mergedDate,ballgown-method Man page
pData Man page Man page
pData,ballgown-method Man page
pData<- Man page Man page
pData<-,ballgown,ANY-method Man page
pctOverlap Man page Source code
plotLatentTranscripts Man page Source code
plotMeans Man page Source code
plotTranscripts Man page Source code
readExon Source code
readIntron Source code
readTranscript Source code
sampleNames Man page Man page
sampleNames,ballgown-method Man page
seqnames Man page Man page
seqnames,ballgown-method Man page
ss Source code
stattest Man page Source code
strip_quotes Source code
structure Man page Man page
structure,ballgown-method Man page
subset Man page Man page
subset,ballgown-method Man page
tGene Man page Source code
texpr Man page Man page
texpr,ballgown-method Man page
transcriptIDs Man page Man page
transcriptIDs,ballgown-method Man page
transcriptNames Man page Man page
transcriptNames,ballgown-method Man page
writeFiles Man page Source code
ballgown documentation built on Nov. 17, 2017, 9:30 a.m.