iexpr: extract transcript-level expression measurements from...

In ballgown: Flexible, isoform-level differential expression analysis

Description

extract transcript-level expression measurements from ballgown objects

Usage

iexpr(x, meas = "rcount")

## S4 method for signature 'ballgown'
iexpr(x, meas = "rcount")

Arguments

x	a ballgown object
meas	type of measurement to extract. Can be "rcount", "ucount", "mrcount", or "all". Default "rcount".

Value

intron-by-sample matrix containing the number of reads (measured as specified by meas) supporting each intron, in each sample. If meas is "all", a data frame is returned, containing all measurements and location information.

Examples

data(bg)
intron_rcount_matrix = iexpr(bg)
intron_data_frame = iexpr(bg, 'all')

ballgown documentation built on Nov. 8, 2020, 5:46 p.m.