texpr: extract transcript-level expression measurements from...

In ballgown: Flexible, isoform-level differential expression analysis

Description

extract transcript-level expression measurements from ballgown objects

Usage

texpr(x, meas = "FPKM")

## S4 method for signature 'ballgown'
texpr(x, meas = "FPKM")

Arguments

x	a ballgown object
meas	type of measurement to extract. Can be "cov", "FPKM", or "all". Default "FPKM".

Value

transcript-by-sample matrix containing expression values (measured by meas). If meas is "all", a data frame is returned, containing all measurements and location information.

Examples

data(bg)
transcript_fpkm_matrix = texpr(bg)
transcript_data_frame = texpr(bg, 'all')

ballgown documentation built on Nov. 8, 2020, 5:46 p.m.