indexes: extract the indexes from ballgown objects

In ballgown: Flexible, isoform-level differential expression analysis

Description

extract the indexes from ballgown objects

Usage

indexes(x)

## S4 method for signature 'ballgown'
indexes(x)

Arguments

x	a ballgown object

Value

list containing elements e2t, i2t, t2g, bamfiles, and pData, where e2t and i2t are data frames linking exons and introns (respectively) to transcripts, t2g is a data frame linking transcripts to genes, and bamfiles and pData are described in ?ballgown.

Examples

data(bg)
names(indexes(bg))
class(indexes(bg))
head(indexes(bg)$t2g)

ballgown documentation built on Nov. 8, 2020, 5:46 p.m.