contains: determine if one set of GRanges fully contains any of another...
In ballgown: Flexible, isoform-level differential expression analysis
Description
Usage
Arguments
Details
Value
Author(s)
Description
determine if one set of GRanges fully contains any of another set of GRanges
Usage
1
contains(transcripts, cds)
Arguments
transcripts
GRangesList object (assume for now that it
represents transcripts)
cds
GRangesList object (assume for now that it represents sets
of coding sequences)
Details
If gown is a ballgown object, transcripts can
be structure(gown)$trans (or any subset).
Value
vector with length equal to length(transcripts), where each
entry is TRUE if the corresponding transcript contains a coding
sequence (i.e., is a superset of at least one entry of cds).
Author(s)
Alyssa Frazee
ballgown documentation built on Nov. 8, 2020, 5:46 p.m.
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Description Usage Arguments Details Value Author(s)
Description
determine if one set of GRanges fully contains any of another set of GRanges
Usage
1 | contains(transcripts, cds)
|
Arguments
transcripts |
|
cds |
|
Details
If gown is a ballgown object, transcripts can
be structure(gown)$trans (or any subset).
Value
vector with length equal to length(transcripts), where each
entry is TRUE if the corresponding transcript contains a coding
sequence (i.e., is a superset of at least one entry of cds).
Author(s)
Alyssa Frazee
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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