gffRead: read in GTF/GFF file as a data frame
In ballgown: Flexible, isoform-level differential expression analysis
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
read in GTF/GFF file as a data frame
Usage
1
Arguments
gffFile
name of GTF/GFF on disk
nrows
number of rows to read in (default -1, which means read all
rows)
verbose
if TRUE, print status info at beginning and end of file read.
Default FALSE.
Value
data frame representing the GTF/GFF file
Author(s)
Kasper Hansen
See Also
getAttributeField to extract data from "attributes"
column; http://useast.ensembl.org/info/website/upload/gff.html for
more information on the GTF/GFF file format.
Examples
1
2
gtfPath = system.file('extdata', 'annot.gtf.gz', package='ballgown')
annot = gffRead(gtfPath)
ballgown documentation built on Nov. 8, 2020, 5:46 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
read in GTF/GFF file as a data frame
Usage
1 |
Arguments
gffFile |
name of GTF/GFF on disk |
nrows |
number of rows to read in (default -1, which means read all rows) |
verbose |
if TRUE, print status info at beginning and end of file read. Default FALSE. |
Value
data frame representing the GTF/GFF file
Author(s)
Kasper Hansen
See Also
getAttributeField to extract data from "attributes"
column; http://useast.ensembl.org/info/website/upload/gff.html for
more information on the GTF/GFF file format.
Examples
1 2 | gtfPath = system.file('extdata', 'annot.gtf.gz', package='ballgown')
annot = gffRead(gtfPath)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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