Files in ballgown
Flexible, isoform-level differential expression analysis

NEWS
README.html
NAMESPACE
DESCRIPTION
tests/test-all.R tests/testthat/test-stats.R tests/testthat/test-plots.R tests/testthat/test-constructor.R tests/testthat/test-annotation.R
build/vignette.rds
vignettes/ballgown.Rmd
data/bg.rda
R/plotMeans.R R/getGenes.R R/ballgown-subset-method.R R/gffReadGR.R R/writeFiles.R R/AllClass.R R/gffRead.R R/ballgown-get-methods.R R/annotate_assembly.R R/plotLatentTranscripts.R R/ballgown-package.R R/clusterTranscripts.R R/ballgown-replace-methods.R R/ballgown-expr-methods.R R/AllGenerics.R R/ballgown-show-method.R R/ballgownrsem.R R/collapseTranscripts.R R/ss.R R/contains.R R/constructor.R R/pctOverlap.R R/exprfilter.R R/tGene.R R/plotTranscripts.R R/bg-data.R R/stattest.R R/getAttributeField.R R/closestColor.R R/checkAssembledTx.R R/assessSim.R R/last.R
inst/extdata/tiny2.isoforms.results.gz
inst/extdata/annot.gtf.gz
inst/extdata/tiny.genes.results.gz
inst/extdata/tiny2.genes.results.gz
inst/extdata/tiny.isoforms.results.gz
inst/extdata/hg19_genes_small.gtf.gz
inst/extdata/sample07/e_data.ctab
inst/extdata/sample07/i2t.ctab
inst/extdata/sample07/i_data.ctab
inst/extdata/sample07/t_data.ctab
inst/extdata/sample07/e2t.ctab
inst/extdata/sample14/e2t.ctab
inst/extdata/sample14/i_data.ctab
inst/extdata/sample14/e_data.ctab
inst/extdata/sample14/t_data.ctab
inst/extdata/sample14/i2t.ctab
inst/extdata/sample13/i_data.ctab
inst/extdata/sample13/i2t.ctab
inst/extdata/sample13/e_data.ctab
inst/extdata/sample13/t_data.ctab
inst/extdata/sample13/e2t.ctab
inst/extdata/sample19/i2t.ctab
inst/extdata/sample19/t_data.ctab
inst/extdata/sample19/i_data.ctab
inst/extdata/sample19/e_data.ctab
inst/extdata/sample19/e2t.ctab
inst/extdata/sample04/e_data.ctab
inst/extdata/sample04/e2t.ctab
inst/extdata/sample04/i_data.ctab
inst/extdata/sample04/i2t.ctab
inst/extdata/sample04/t_data.ctab
inst/extdata/sample17/t_data.ctab
inst/extdata/sample17/i2t.ctab
inst/extdata/sample17/e_data.ctab
inst/extdata/sample17/e2t.ctab
inst/extdata/sample17/i_data.ctab
inst/extdata/sample10/i_data.ctab
inst/extdata/sample10/e2t.ctab
inst/extdata/sample10/e_data.ctab
inst/extdata/sample10/t_data.ctab
inst/extdata/sample10/i2t.ctab
inst/extdata/sample03/e2t.ctab
inst/extdata/sample03/i_data.ctab
inst/extdata/sample03/e_data.ctab
inst/extdata/sample03/t_data.ctab
inst/extdata/sample03/i2t.ctab
inst/extdata/sample09/e_data.ctab
inst/extdata/sample09/i_data.ctab
inst/extdata/sample09/e2t.ctab
inst/extdata/sample09/t_data.ctab
inst/extdata/sample09/i2t.ctab
inst/extdata/sample01/e2t.ctab
inst/extdata/sample01/e_data.ctab
inst/extdata/sample01/i_data.ctab
inst/extdata/sample01/t_data.ctab
inst/extdata/sample01/i2t.ctab
inst/extdata/sample20/i2t.ctab
inst/extdata/sample20/t_data.ctab
inst/extdata/sample20/i_data.ctab
inst/extdata/sample20/e_data.ctab
inst/extdata/sample20/e2t.ctab
inst/extdata/sample18/e_data.ctab
inst/extdata/sample18/i_data.ctab
inst/extdata/sample18/e2t.ctab
inst/extdata/sample18/t_data.ctab
inst/extdata/sample18/i2t.ctab
inst/extdata/sample12/e_data.ctab
inst/extdata/sample12/i2t.ctab
inst/extdata/sample12/i_data.ctab
inst/extdata/sample12/t_data.ctab
inst/extdata/sample12/e2t.ctab
inst/extdata/sample15/t_data.ctab
inst/extdata/sample15/e2t.ctab
inst/extdata/sample15/i_data.ctab
inst/extdata/sample15/i2t.ctab
inst/extdata/sample15/e_data.ctab
inst/extdata/sample06/e_data.ctab
inst/extdata/sample06/e2t.ctab
inst/extdata/sample06/i_data.ctab
inst/extdata/sample06/i2t.ctab
inst/extdata/sample06/t_data.ctab
inst/extdata/sample08/i_data.ctab
inst/extdata/sample08/e2t.ctab
inst/extdata/sample08/e_data.ctab
inst/extdata/sample08/i2t.ctab
inst/extdata/sample08/t_data.ctab
inst/extdata/sample02/t_data.ctab
inst/extdata/sample02/i2t.ctab
inst/extdata/sample02/e_data.ctab
inst/extdata/sample02/e2t.ctab
inst/extdata/sample02/i_data.ctab
inst/extdata/sample11/e2t.ctab
inst/extdata/sample11/t_data.ctab
inst/extdata/sample11/e_data.ctab
inst/extdata/sample11/i_data.ctab
inst/extdata/sample11/i2t.ctab
inst/extdata/sample16/t_data.ctab
inst/extdata/sample16/e2t.ctab
inst/extdata/sample16/i2t.ctab
inst/extdata/sample16/e_data.ctab
inst/extdata/sample16/i_data.ctab
inst/extdata/sample05/i2t.ctab
inst/extdata/sample05/t_data.ctab
inst/extdata/sample05/i_data.ctab
inst/extdata/sample05/e_data.ctab
inst/extdata/sample05/e2t.ctab
inst/doc/ballgown.R inst/doc/ballgown.Rmd
inst/doc/ballgown.html
man/bg.Rd man/indexes.Rd man/gffReadGR.Rd man/eexpr.Rd man/pData.Rd man/indexes-replace.Rd man/tGene.Rd man/gexpr.Rd man/geneIDs.Rd man/annotate_assembly.Rd man/gffRead.Rd man/dirs.Rd man/texpr.Rd man/ballgown-package.Rd man/stattest.Rd man/geneNames.Rd man/sampleNames.Rd man/writeFiles.Rd man/getAttributeField.Rd man/transcriptNames.Rd man/getGenes.Rd man/plotLatentTranscripts.Rd man/mergedDate.Rd man/exprfilter.Rd man/expr-replace.Rd man/pData-replace.Rd man/checkAssembledTx.Rd man/subset.Rd man/ballgownrsem.Rd man/iexpr.Rd man/transcriptIDs.Rd man/plotTranscripts.Rd man/pctOverlap.Rd man/contains.Rd man/seqnames.Rd man/plotMeans.Rd man/structure.Rd man/expr.Rd man/last.Rd man/ballgown-class.Rd man/collapseTranscripts.Rd man/ballgown-constructor.Rd man/clusterTranscripts.Rd
ballgown documentation built on Nov. 17, 2017, 9:30 a.m.