Files in ballgown

Flexible, isoform-level differential expression analysis

R/constructor.R R/pctOverlap.R R/collapseTranscripts.R R/ballgown-expr-methods.R R/ballgown-replace-methods.R R/assessSim.R R/ballgown-package.R R/last.R R/plotTranscripts.R R/plotMeans.R R/AllGenerics.R R/exprfilter.R R/clusterTranscripts.R R/getAttributeField.R R/ballgown-get-methods.R R/gffReadGR.R R/stattest.R R/writeFiles.R R/tGene.R R/annotate_assembly.R R/ballgown-subset-method.R R/closestColor.R R/ballgown-show-method.R R/checkAssembledTx.R R/ballgownrsem.R R/gffRead.R R/contains.R R/bg-data.R R/getGenes.R R/plotLatentTranscripts.R R/ss.R R/AllClass.R vignettes/ballgown.Rmd man/plotTranscripts.Rd man/plotLatentTranscripts.Rd man/plotMeans.Rd man/pData.Rd man/sampleNames.Rd man/contains.Rd man/transcriptNames.Rd man/iexpr.Rd man/indexes.Rd man/structure.Rd man/mergedDate.Rd man/gffRead.Rd man/transcriptIDs.Rd man/subset.Rd man/getGenes.Rd man/clusterTranscripts.Rd man/ballgown-package.Rd man/last.Rd man/checkAssembledTx.Rd man/ballgown-class.Rd man/gffReadGR.Rd man/eexpr.Rd man/indexes-replace.Rd man/gexpr.Rd man/dirs.Rd man/annotate_assembly.Rd man/geneIDs.Rd man/texpr.Rd man/bg.Rd man/pctOverlap.Rd man/writeFiles.Rd man/getAttributeField.Rd man/geneNames.Rd man/seqnames.Rd man/expr-replace.Rd man/expr.Rd man/tGene.Rd man/pData-replace.Rd man/ballgown-constructor.Rd man/exprfilter.Rd man/stattest.Rd man/collapseTranscripts.Rd man/ballgownrsem.Rd tests/test-all.R tests/testthat/test-constructor.R tests/testthat/test-stats.R tests/testthat/test-plots.R tests/testthat/test-annotation.R inst/doc/ballgown.R inst/doc/ballgown.Rmd