Global functions | |
---|---|
.annGenesComp | Source code |
.annotateOutData | Source code |
.breakEdges | Source code |
.breakEdgesGraph | Source code |
.ccCompare | Source code |
.ccCompareGO | Source code |
.ccCompareGeneric | Source code |
.ccCompareKEGG | Source code |
.ccOutCyt | Source code |
.classGen | Source code |
.colorData | Source code |
.compData | Source code |
.compMem | Source code |
.cwReload | Source code |
.cytOutData | Source code |
.cytOutNodes | Source code |
.extractRes | Source code |
.getDesc | Source code |
.goEnrich | Source code |
.headerOutData | Source code |
.initGraphAtts | Source code |
.keggEnrich | Source code |
.makeValidccLists | Source code |
.makeValidccOptions | Source code |
.mergeLists | Source code |
.minNodes | Source code |
.moveTable | Source code |
.outType | Source code |
.replaceCompareNames | Source code |
.resetColors | Source code |
GENccEnrichResult | Man page |
GENccEnrichResult,ccCompareGeneric-method | Man page |
GENccEnrichResult-class | Man page |
GOHyperGParams | Man page |
GOHyperGParams-class | Man page |
GOHyperGParamsCC | Man page |
GOHyperGParamsCC-class | Man page |
GOHyperGResultCC | Man page |
GOHyperGResultCC-class | Man page |
GOccEnrichResult | Man page |
GOccEnrichResult-class | Man page |
HyperGParamsCC | Man page |
HyperGParamsCC-class | Man page |
HyperGResultCC | Man page |
HyperGResultCC-class | Man page |
KEGGHyperGParams | Man page |
KEGGHyperGParams-class | Man page |
KEGGHyperGParamsCC | Man page |
KEGGHyperGParamsCC-class | Man page |
KEGGHyperGResultCC | Man page |
KEGGHyperGResultCC-class | Man page |
KEGGccEnrichResult | Man page |
KEGGccEnrichResult-class | Man page |
[,GENccEnrichResult,ANY,ANY,ANY-method | Man page |
[,GENccEnrichResult,ANY,ANY-method | Man page |
[,ccEnrichResult,ANY,ANY,ANY-method | Man page |
[,ccEnrichResult,ANY,ANY-method | Man page |
addListMembership | Source code |
allAnnotation | Man page |
allAnnotation,ccCompareResult-method | Man page |
annStatus | Source code |
annotation,ccSigList-method | Man page |
breakEdges | Man page |
breakEdges,ccCompareResult,numeric-method | Man page |
breakEdges,numeric,numeric-method | Man page |
breakEdges-methods | Man page |
category,GENccEnrichResult-method | Man page |
category,ccSigList-method | Man page |
categoryCompare | Man page |
categoryCompare-package | Man page |
ccCompare | Man page |
ccCompare,GENccEnrichResult,ccOptions-method | Man page |
ccCompare,GOccEnrichResult,ccOptions-method | Man page |
ccCompare,KEGGccEnrichResult,ccOptions-method | Man page |
ccCompare,ccEnrichCollection,ccOptions-method | Man page |
ccCompare-methods | Man page |
ccCompareCollection | Man page |
ccCompareCollection-class | Man page |
ccCompareGeneric | Man page |
ccCompareGeneric,GENccEnrichResult,ccOptions-method | Man page |
ccCompareGeneric-methods | Man page |
ccCompareResult | Man page |
ccCompareResult-class | Man page |
ccData | Man page |
ccEnrich | Man page |
ccEnrich,ccGeneList-method | Man page |
ccEnrich-method | Man page |
ccEnrichCollection | Man page |
ccEnrichCollection-class | Man page |
ccEnrichResult | Man page |
ccEnrichResult-class | Man page |
ccGeneList | Man page |
ccGeneList-class | Man page |
ccOptions | Man page |
ccOptions,ccCompareGeneric-method | Man page |
ccOptions-class | Man page |
ccOpts | Man page |
ccOutCyt | Man page |
ccOutCyt,ccCompareResult,ccOptions-method | Man page |
ccOutCyt-methods | Man page |
ccResults | Man page |
ccResultsBPHier | Man page |
ccSigList | Man page |
ccSigList-class | Man page |
ccType | Man page |
ccType,ccGeneList-method | Man page |
ccType<- | Man page |
ccType<-,ccGeneList-method | Man page |
compareColors | Man page |
compareColors,ccOptions-method | Man page |
compareColors<- | Man page |
compareColors<-,ccOptions-method | Man page |
compareIndx | Man page |
compareIndx,ccOptions-method | Man page |
compareNames | Man page |
compareNames,ccOptions-method | Man page |
compareNames<- | Man page |
compareNames<-,ccOptions-method | Man page |
createGraph | Source code |
createGraph2 | Source code |
cssClass | Man page |
cssClass,ccOptions-method | Man page |
cwReload | Man page |
cwReload,numeric,ccOptions-method | Man page |
cwReload,numeric,character,ccOptions-method | Man page |
cwReload-methods | Man page |
cytOutData | Man page |
cytOutData,list,ccCompareResult,mergedData-method | Man page |
cytOutData,list,ccCompareResult,missing-method | Man page |
cytOutData,list,missing,missing-method | Man page |
cytOutData-methods | Man page |
cytOutNodes | Man page |
cytOutNodes,character,numeric,list-method | Man page |
cytOutNodes,character,numeric,missing-method | Man page |
cytOutNodes-methods | Man page |
enrichLists | Man page |
fdr | Man page |
fdr,HyperGParamsCC-method | Man page |
fdr,HyperGResultCC-method | Man page |
fdr,ccEnrichResult-method | Man page |
fdr,ccGeneList-method | Man page |
fdr<- | Man page |
fdr<-,HyperGParamsCC-method | Man page |
fdr<-,ccGeneList-method | Man page |
fdrvalues | Man page |
fdrvalues,HyperGResultCC-method | Man page |
fdrvalues-method | Man page |
gUniverse | Man page |
geneAnnMapping | Man page |
geneAnnMapping,GENccEnrichResult-method | Man page |
geneLists | Man page |
getAnnotation | Man page Source code |
getBar | Source code |
getEntrez | Source code |
getGO2ALLEGS | Man page Source code |
getGeneName | Man page Source code |
getGeneSymbol | Man page Source code |
getPATH2EG | Man page Source code |
graphType | Man page |
graphType,GENccEnrichResult-method | Man page |
graphType,ccEnrichCollection-method | Man page |
graphType,ccEnrichResult-method | Man page |
graphType-methods | Man page |
graphType<- | Man page |
graphType<-,GENccEnrichResult-method | Man page |
graphType<-,ccEnrichCollection-method | Man page |
graphType<-,ccEnrichResult-method | Man page |
gseaRes | Man page |
hyperGTestCC | Man page |
hyperGTestCC,HyperGParamsCC | Man page |
hyperGTestCC,HyperGParamsCC-method | Man page |
hyperGTestCat | Source code |
isPackageLoaded | Source code |
isResult | Source code |
listNames | Man page |
listNames,ccGeneList-method | Man page |
listNames,ccOptions-method | Man page |
listNames<-,ccOptions-method | Man page |
mainGraph | Man page |
mainGraph,ccCompareResult-method | Man page |
mainTable | Man page |
mainTable,ccCompareResult-method | Man page |
mergeLists | Man page |
mergeLists,ccGeneList,ccOptions-method | Man page |
mergeLists-methods | Man page |
mergedData-class | Man page |
minCount | Man page |
minCount,HyperGResultCC-method | Man page |
minCount,ccEnrichResult-method | Man page |
minCount<- | Man page |
minCount<-,HyperGResultCC-method | Man page |
minCount<-,ccEnrichCollection-method | Man page |
minCount<-,ccEnrichResult-method | Man page |
minNodes | Man page |
minNodes,CytoscapeWindowClass,numeric-method | Man page |
nodeDat2Table | Source code |
ontology,GENccEnrichResult-method | Man page |
ontology,ccSigList-method | Man page |
outType | Man page |
outType,ccOptions-method | Man page |
outType<- | Man page |
outType<-,ccOptions-method | Man page |
pCC,HyperGResultCC-method | Man page |
pvalueCutoff,ccEnrichResult-method | Man page |
pvalueCutoff,ccGeneList-method | Man page |
pvalueCutoff<-,HyperGResultCC-method | Man page |
pvalueCutoff<-,ccEnrichCollection-method | Man page |
pvalueCutoff<-,ccEnrichResult-method | Man page |
pvalueCutoff<-,ccGeneList-method | Man page |
pvalueType | Man page |
pvalueType,HyperGResultCC-method | Man page |
pvalueType,ccEnrichResult-method | Man page |
pvalueType<- | Man page |
pvalueType<-,HyperGResultCC-method | Man page |
pvalueType<-,ccEnrichCollection-method | Man page |
pvalueType<-,ccEnrichResult-method | Man page |
resetColors | Man page |
resetColors,numeric,ccOptions-method | Man page |
resetColors-methods | Man page |
show,HyperGResultCC-method | Man page |
show-methods | Man page |
sigID | Man page |
sigID,ccSigList-method | Man page |
summary,HyperGResultCC-method | Man page |
summary-methods | Man page |
table10 | Man page |
table48 | Man page |
testDirection,ccGeneList-method | Man page |
visStatus | Source code |
whichCat | Source code |
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