CellBaseR-class: CellBaseR Class

In cellbaseR: Querying annotation data from the high performance Cellbase web

Description

This is an S4 class which defines the CellBaseR object

Details

This S4 class holds the default configuration required by CellBaseR methods to connect to the cellbase web services. By default it is configured to query human data based on the GRCh37 assembly assembly.

Slots

host

a character specifying the host url. Default "http://bioinfo.hpc.cam.ac.uk/cellbase/webservices/rest/"

version

a character specifying the API version. Default "v4"

species

a character specifying the species to be queried. Default "hsapiens"

batch_size

if multiple queries are raised by a single method call, e.g. getting annotation info for several features, queries will be sent to the server in batches. This slot indicates the size of these batches. Default 200

num_threads

the number of threads. Default 8

See Also

https://github.com/opencb/cellbase/wiki and the RESTful API documentation http://bioinfo.hpc.cam.ac.uk/cellbase/webservices/

cellbaseR documentation built on Nov. 8, 2020, 5:38 p.m.