getTranscript-CellBaseR-method: getTranscript

Description Usage Arguments Details Value See Also Examples

Description

A method to query transcript data from Cellbase web services.

Usage

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## S4 method for signature 'CellBaseR'
getTranscript(object, ids, resource, param = NULL)

Arguments

object

an object of class CellBaseR

ids

a character vector of the transcript ids to be queried, use ensemble transccript IDs eq, ENST00000380152

resource

a character vector to specify the resource to be queried

param

an object of class CellBaseParam specifying additional params for the query

Details

This method retrieves various genomic annotations for transcripts including exons, cDNA sequence, annotations flags, and cross references,etc.

Value

a dataframe with the results of the query

See Also

https://github.com/opencb/cellbase/wiki and the RESTful API documentation http://bioinfo.hpc.cam.ac.uk/cellbase/webservices/

Examples

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   cb <- CellBaseR()
   res <- getTranscript(object=cb, ids="ENST00000373644", resource="info")

cellbaseR documentation built on Nov. 8, 2020, 5:38 p.m.