Description Usage Arguments Details Value See Also Examples
A method to query transcript data from Cellbase web services.
1 2 | ## S4 method for signature 'CellBaseR'
getTranscript(object, ids, resource, param = NULL)
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object |
an object of class CellBaseR |
ids |
a character vector of the transcript ids to be queried, use ensemble transccript IDs eq, ENST00000380152 |
resource |
a character vector to specify the resource to be queried |
param |
an object of class CellBaseParam specifying additional params for the query |
This method retrieves various genomic annotations for transcripts including exons, cDNA sequence, annotations flags, and cross references,etc.
a dataframe with the results of the query
https://github.com/opencb/cellbase/wiki and the RESTful API documentation http://bioinfo.hpc.cam.ac.uk/cellbase/webservices/
1 2 | cb <- CellBaseR()
res <- getTranscript(object=cb, ids="ENST00000373644", resource="info")
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