getTf-CellBaseR-method: getTf

In cellbaseR: Querying annotation data from the high performance Cellbase web

Description

A method to query transcription factors binding sites data from Cellbase web services.

Usage

## S4 method for signature 'CellBaseR'
getTf(object, ids, resource, param = NULL)

Arguments

object	an object of class CellBaseR
ids	a character vector of the ids to be queried, must be a valid transcription factor name, for example, eg, CTCF
resource	a character vector to specify the resource to be queried
param	a object of class CellBaseParam specifying additional param for the query

Details

This method retrieves various transcription factors binding sites data

Value

a dataframe with the results of the query

See Also

https://github.com/opencb/cellbase/wiki and the RESTful API documentation http://bioinfo.hpc.cam.ac.uk/cellbase/webservices/

Examples

   cb <- CellBaseR()
   param <- CellBaseParam(limit = 12)
   res <- getTf(object=cb, ids="CTCF", resource="tfbs", param=param)

cellbaseR documentation built on Nov. 8, 2020, 5:38 p.m.