getGene-CellBaseR-method: getGene

Description Usage Arguments Details Value See Also Examples

Description

A method to query gene data from Cellbase web services.

Usage

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## S4 method for signature 'CellBaseR'
getGene(object, ids, resource, param = NULL)

Arguments

object

an object of class CellBaseR

ids

a character vector of gene ids to be queried

resource

a character vector to specify the resource to be queried

param

an object of class CellBaseParam specifying additional param for the CellBaseR

Details

This method retrieves various gene annotations including transcripts and exons data as well as gene expression and clinical data

Value

a dataframe with the results of the query

See Also

https://github.com/opencb/cellbase/wiki and the RESTful API documentation http://bioinfo.hpc.cam.ac.uk/cellbase/webservices/

Examples

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   cb <- CellBaseR()
   res <- getGene(object=cb, ids=c("TP73","TET1"), resource="info")

cellbaseR documentation built on Nov. 8, 2020, 5:38 p.m.