API for chimera
A package for secondary analysis of fusion products
| Global functions | |
|---|---|
| .bfImport | Source code |
| .buildFusion | Source code |
| .csImport | Source code |
| .detectIntronic | Source code |
| .dfImport | Source code |
| .fcImport | Source code |
| .ffImport | Source code |
| .fhImport | Source code |
| .fmImport | Source code |
| .geneLevelAnnotation | Source code |
| .gfWrap | Source code |
| .msImport | Source code |
| .onAttach | Source code |
| .onlyExons | Source code |
| .rsImport | Source code |
| .starImport | Source code |
| .thfImport | Source code |
| .thfPostImport | Source code |
| MHmakeRandomString | Man page Source code |
| addGA | Man page |
| addGA,fSet-method | Man page |
| addRNA | Man page |
| addRNA,fSet-method | Man page |
| bam2fastq | Man page Source code |
| breakpointOverlaps | Man page Source code |
| chimera | Man page |
| chimera-package | Man page |
| chimeraSeqSet | Man page Source code |
| chimeraSeqs | Man page Source code |
| defuseTPTN | Man page Source code |
| fSet | Man page |
| fSet-class | Man page |
| filterList | Man page Source code |
| filterSamReads | Man page Source code |
| fusionData | Man page |
| fusionData,fSet-method | Man page |
| fusionGA | Man page |
| fusionGA,fSet-method | Man page |
| fusionGRL | Man page |
| fusionGRL,fSet-method | Man page |
| fusionName | Man page Source code |
| fusionPeptides | Man page Source code |
| fusionRNA | Man page |
| fusionRNA,fSet-method | Man page |
| gapfillerInstallation | Man page Source code |
| gapfillerRun | Man page Source code |
| gapfillerWrap | Man page Source code |
| importFusionData | Man page Source code |
| is.fSet | Man page |
| newfSet | Man page Source code |
| newfSet,fSet-method | Man page |
| oncofuseInstallation | Man page Source code |
| oncofuseRun | Man page Source code |
| picardInstallation | Man page Source code |
| plotCoverage | Man page Source code |
| prettyPrint | Man page Source code |
| removingErrorLine | Man page Source code |
| starInstallation | Man page Source code |
| starReads | Man page Source code |
| starRun | Man page Source code |
| subreadRun | Man page Source code |
| supportingReads | Man page Source code |
| tophatInstallation | Man page Source code |
| tophatRun | Man page Source code |
| validateSamFile | Man page Source code |
