filterSamReads: A function to filter SAM or BAM files
In chimera: A package for secondary analysis of fusion products
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
A function to filter SAM or BAM files using picard-tools
Usage
1
filterSamReads(input, output, filter=c("includeAligned","excludeAligned"))
Arguments
input
SAM/BAM file to be validated
output
file name in which to save the filtered reselts
filter
type of filter
Value
A filtered SAM/BAM.
Author(s)
Raffaele A Calogero
See Also
Examples
1
# filterSamReads(input="kd2_accepted_hits2.sam", output="kd2_accepted_hits2_mapped.sam", filter="includeAligned")
chimera documentation built on Nov. 8, 2020, 5:16 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
A function to filter SAM or BAM files using picard-tools
Usage
1 | filterSamReads(input, output, filter=c("includeAligned","excludeAligned"))
|
Arguments
input |
SAM/BAM file to be validated |
output |
file name in which to save the filtered reselts |
filter |
type of filter |
Value
A filtered SAM/BAM.
Author(s)
Raffaele A Calogero
See Also
Examples
1 | # filterSamReads(input="kd2_accepted_hits2.sam", output="kd2_accepted_hits2_mapped.sam", filter="includeAligned")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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