API for chimera
A package for secondary analysis of fusion products

Global functions
.bfImport Source code
.buildFusion Source code
.csImport Source code
.detectIntronic Source code
.dfImport Source code
.fcImport Source code
.ffImport Source code
.fhImport Source code
.fmImport Source code
.geneLevelAnnotation Source code
.gfWrap Source code
.msImport Source code
.onlyExons Source code
.rsImport Source code
.starImport Source code
.thfImport Source code
.thfPostImport Source code
MHmakeRandomString Man page Source code
addGA Man page
addGA,fSet-method Man page
addRNA Man page
addRNA,fSet-method Man page
bam2fastq Man page Source code
breakpointOverlaps Man page Source code
chimera Man page
chimera-package Man page
chimeraSeqSet Man page Source code
chimeraSeqs Man page Source code
defuseTPTN Man page Source code
fSet Man page
fSet-class Man page
filterList Man page Source code
filterSamReads Man page Source code
fusionData Man page
fusionData,fSet-method Man page
fusionGA Man page
fusionGA,fSet-method Man page
fusionGRL Man page
fusionGRL,fSet-method Man page
fusionName Man page Source code
fusionPeptides Man page Source code
fusionRNA Man page
fusionRNA,fSet-method Man page
gapfillerInstallation Man page Source code
gapfillerRun Man page Source code
gapfillerWrap Man page Source code
importFusionData Man page Source code
is.fSet Man page
newfSet Man page Source code
newfSet,fSet-method Man page
oncofuseInstallation Man page Source code
oncofuseRun Man page Source code
picardInstallation Man page Source code
plotCoverage Man page Source code
prettyPrint Man page Source code
removingErrorLine Man page Source code
starInstallation Man page Source code
starReads Man page Source code
starRun Man page Source code
subreadRun Man page Source code
supportingReads Man page Source code
tophatInstallation Man page Source code
tophatRun Man page Source code
validateSamFile Man page Source code
chimera documentation built on April 29, 2020, 2:38 a.m.