gapfillerInstallation: A function to download a compiled version of GapFiller

Description Usage Arguments Author(s) See Also Examples

View source: R/denovoFusionCheck.R

Description

A function allowing the download and installation of a compiled version of GapFiller in chimera package folder. The source code of GapFiller can be retrieved at http://sourceforge.net/projects/gapfiller/files/?source=navbar . The paper describing the tool is Nadalin F, Vezzi F, Policriti A. GapFiller: a de novo assembly approach to fill the gap within paired reads. BMC Bioinformatics. 2012;13 Suppl 14:S8.

Usage

1
gapfillerInstallation(os=c("mac64","unix64"))

Arguments

os

The supported operating systems

Author(s)

Raffaele A Calogero

See Also

gapfillerRun

Examples

1
#gapfillerInstallation(os="mac64")

chimera documentation built on Nov. 8, 2020, 5:16 p.m.