defuseTPTN: A function that genererate a list of fSet objects encopassing...
In chimera: A package for secondary analysis of fusion products
Description
Usage
Value
Author(s)
Examples
Description
The function uses the file defuse_TP_FP.txt located in the examples folder of chimera to
generate a list of fSet object encompassing 60 TP fusions and 61 TN fusions extracted from supplementary table 8
of the deFuse paper McPherson et al. (2011) PLoS Comput Biol 7(5): e1001138.
The fset object can be used to evaluate the efficacy of filtering approaches available in chimera package.
Usage
1
Value
An list of fSet objects: Experimentally validated fusions 1-60, fish validated fusions 1-14, false fusions 61-121.
Author(s)
Raffaele A Calogero
Examples
1
tptn <-defuseTPTN()
chimera documentation built on Nov. 8, 2020, 5:16 p.m.
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Description Usage Value Author(s) Examples
Description
The function uses the file defuse_TP_FP.txt located in the examples folder of chimera to generate a list of fSet object encompassing 60 TP fusions and 61 TN fusions extracted from supplementary table 8 of the deFuse paper McPherson et al. (2011) PLoS Comput Biol 7(5): e1001138. The fset object can be used to evaluate the efficacy of filtering approaches available in chimera package.
Usage
1 |
Value
An list of fSet objects: Experimentally validated fusions 1-60, fish validated fusions 1-14, false fusions 61-121.
Author(s)
Raffaele A Calogero
Examples
1 | tptn <-defuseTPTN()
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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