prettyPrint: A function to represent a list of fSet as a dataframe
In chimera: A package for secondary analysis of fusion products

Description Usage Arguments Author(s) Examples

A function reorganizing a list of fSet in a dataframe structure. The dataframe is then saved in a tab delimited file

1	prettyPrint(list, filename, fusion.reads=c("all","spanning"))

`list`	a list of fSet object
`filename`	the name of the file in which the dataframe is printed
`fusion.reads`	it allows to extract spanning reads associated to the SeedCount slot or all the detected reads associate to the RescuedCount

Raffaele A Calogero

#tmp <- importFusionData("fusionmap", paste(find.package(package="chimera"),"/examples/mcf7.FMFusionReport", sep=""), org="hg19")
#fusion.names <- fusionName(tmp)
#tmp1 <- filterList(tmp, type="fusion.names", fusion.names[c(1,3,7)], parallel=FALSE)
#prettyPrint(tmp1, "tmp1.df.txt", fusion.reads="spanning")

chimera documentation built on Nov. 8, 2020, 5:16 p.m.