tophatInstallation: A function to download tophat, bowtie and samtools
In chimera: A package for secondary analysis of fusion products
Description
Usage
Arguments
Author(s)
Examples
Description
A function allowing the download and installation of tophat, bowtie and samtools in chimera package folder. The function also creates soft links in the user bin folder to allow the call of the above mentioned programs.
Usage
1
tophatInstallation(binDir, os=c("unix","mac"))
Arguments
binDir
The user bin folder
os
The supported operating systems
Author(s)
Raffaele A Calogero
Examples
1
#tophatInstallation(binDir="/somewhere/inyourpc/bin", os="mac")
chimera documentation built on Nov. 8, 2020, 5:16 p.m.
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Description Usage Arguments Author(s) Examples
Description
A function allowing the download and installation of tophat, bowtie and samtools in chimera package folder. The function also creates soft links in the user bin folder to allow the call of the above mentioned programs.
Usage
1 | tophatInstallation(binDir, os=c("unix","mac"))
|
Arguments
binDir |
The user bin folder |
os |
The supported operating systems |
Author(s)
Raffaele A Calogero
Examples
1 | #tophatInstallation(binDir="/somewhere/inyourpc/bin", os="mac")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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