Files in chimera
A package for secondary analysis of fusion products
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
src/general.h
src/StarParser.cpp
R/fusionRNA.R
R/fusionData.R
R/importFusionData.R
R/chimeraSeqs.R
R/fusionPeptides.R
R/AllGenerics.R
R/subread.R
R/denovoFusionCheck.R
R/defuseTPTN.R
R/plotCoverage.R
R/zzz.R
R/addGA.R
R/AllClasses.R
R/fusionGA.R
R/tophat.R
R/AllUtilities.R
R/show.R
R/is.fSet.R
R/addRNA.R
R/fusionGRL.R
R/star.R
vignettes/chimera.Rnw
man/chimera-package.Rd
man/chimeraSeqSet.Rd
man/newfSet.Rd
man/breakpointOverlaps.Rd
man/validateSamFile.Rd
man/oncofuseRun.Rd
man/is.fSet.Rd
man/filterSamReads.Rd
man/removingErrorLine.Rd
man/prettyPrint.Rd
man/gapfillerInstallation.Rd
man/bam2fastq.Rd
man/filterList.Rd
man/tophatRun.Rd
man/starReads.Rd
man/starRun.Rd
man/gapfillerWrap.Rd
man/defuseTPTN.Rd
man/supportingReads.Rd
man/fusionName.Rd
man/class.fSet.Rd
man/chimeraSeqs.Rd
man/subreadRun.Rd
man/gapfillerRun.Rd
man/picardInstallation.Rd
man/starInstallation.Rd
man/oncofuseInstallation.Rd
man/plotCoverage.Rd
man/MHmakeRandomString.Rd
man/tophatInstallation.Rd
man/fusionPeptides.Rd
man/importFusionData.Rd
inst/CITATION
inst/doc/chimera.pdf
inst/doc/chimera.Rnw
inst/doc/chimera.R
inst/examples/uc002xvp.1-243_uc002iyu.4-1031.fa
inst/examples/SULF2_ARFGEF2.fa
inst/examples/uc002xvp.1-243_uc002iyu.4-1031_R2.fastq
inst/examples/mcf7_sample_1.fq
inst/examples/edgren.stat.detection.txt
inst/examples/Edgren_true.positives.txt
inst/examples/defuse_TP_FP.txt
inst/examples/mcf7.FMFusionReport
inst/examples/Edgren_df.tsv
inst/examples/uc002xtx.4-272_uc010zyd.2-988_R1.fastq
inst/examples/mcf7_trs_accepted_hits.bam
inst/examples/fset_ARFGEF2-SULF2.rda
inst/examples/uc002xtx.4-272_uc010zyd.2-988_R2.fastq
inst/examples/uc002xvp.1-243_uc002iyu.4-1031_R1.fastq
inst/examples/Edgreen_fm.txt
inst/examples/mcf7_sample_2.fq
inst/examples/Edgren_cs.txt
inst/examples/uc002xtx.4-272_uc010zyd.2-988.fa
