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tests/testthat/test_stateswap.R
In chromstaR: Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data
messageU("State swap")
### Test all binned data in folder stateswap for correct convergence ###
files <- list.files('stateswap', full.names=TRUE)
## H3K27Ac_GMP_Rep1
ID <- "H3K27Ac_GMP_Rep1"
file <- grep(ID, files, value=T)
unimodel <- callPeaksUnivariate(file, eps=1, verbosity = 0)
expect_that(unimodel$weights['modified'], is_less_than(0.2))
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chromstaR documentation built on Nov. 8, 2020, 8:29 p.m.
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messageU("State swap")
### Test all binned data in folder stateswap for correct convergence ###
files <- list.files('stateswap', full.names=TRUE)
## H3K27Ac_GMP_Rep1
ID <- "H3K27Ac_GMP_Rep1"
file <- grep(ID, files, value=T)
unimodel <- callPeaksUnivariate(file, eps=1, verbosity = 0)
expect_that(unimodel$weights['modified'], is_less_than(0.2))
Try the chromstaR package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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