Files in cmapR

CMap Tools in R

install_cmapR.R

LICENSE

.dockerignore

NEWS

NAMESPACE

DESCRIPTION

README.md tests/testthat.R

tests/testthat/matrices.rds

tests/testthat/test_0.2_io.R

tests/testthat/arr3d.rds

tests/testthat/test_1_utils.R

tests/testthat/rnorm20.rds

tests/testthat/robust_zs_rnorm20.rds

tests/testthat/test_0.1_GCT.R

tests/testthat/rnorm_matrix.rds

tests/testthat/test_cdesc.txt

tests/testthat/test_GCT_class.R tests/testthat/test_deprecated.R

tests/testthat/test_n5x10.gctx

tests/testthat/test_n5x10.gct

tests/testthat/distil_result.rds

tests/testthat/test_3_math.R

tests/testthat/extract.gct.res.rds

docs/Makefile

docs/source/utils.rst

docs/source/licenses.rst

docs/source/data.rst

docs/source/available_modules.rst

docs/source/build.rst

docs/source/faq.rst

docs/source/conf.py

docs/source/citing.rst

docs/source/contributing.rst

docs/source/io.rst

docs/source/index.rst

docs/build/doctrees/index.doctree

docs/build/doctrees/build.doctree

docs/build/doctrees/citing.doctree

docs/build/doctrees/available_modules.doctree

docs/build/doctrees/data.doctree

docs/build/doctrees/io.doctree

docs/build/doctrees/utils.doctree

docs/build/doctrees/environment.pickle

docs/build/doctrees/licenses.doctree

docs/build/doctrees/contributing.doctree

docs/build/doctrees/faq.doctree

docs/build/html/searchindex.js

docs/build/html/faq.html

docs/build/html/available_modules.html

docs/build/html/citing.html

docs/build/html/contributing.html

docs/build/html/licenses.html

docs/build/html/genindex.html

docs/build/html/data.html

docs/build/html/objects.inv

docs/build/html/build.html

docs/build/html/.buildinfo

docs/build/html/io.html

docs/build/html/search.html

docs/build/html/index.html

docs/build/html/utils.html

docs/build/html/_sources/data.txt

docs/build/html/_sources/faq.txt

docs/build/html/_sources/available_modules.txt

docs/build/html/_sources/build.txt

docs/build/html/_sources/licenses.txt

docs/build/html/_sources/citing.txt

docs/build/html/_sources/utils.txt

docs/build/html/_sources/io.txt

docs/build/html/_sources/index.txt

docs/build/html/_sources/contributing.txt

docs/build/html/_static/minus.png

docs/build/html/_static/jquery-1.11.1.js

docs/build/html/_static/plus.png

docs/build/html/_static/doctools.js

docs/build/html/_static/underscore-1.3.1.js

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docs/build/html/_static/fonts/Inconsolata-Regular.ttf

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docs/build/html/_static/fonts/RobotoSlab-Regular.ttf

docs/build/html/_static/fonts/Lato-Regular.ttf

docs/build/html/_static/fonts/RobotoSlab-Bold.ttf

docs/build/html/_static/fonts/fontawesome-webfont.eot

docs/build/html/_static/fonts/Lato-Bold.ttf

docs/build/html/_static/fonts/fontawesome-webfont.ttf

docs/build/html/_static/css/theme.css

docs/build/html/_static/css/badge_only.css

docs/build/html/_static/js/theme.js

docs/build/html/_static/js/modernizr.min.js

docker/Dockerfile

docker/nginx.conf

R/GCT.R R/math.R R/deprecated.R R/utils.R R/data.R R/io.R man/mat.Rd man/lxb2mat.Rd man/threshold.Rd man/write_grp.Rd man/na_pad_matrix.Rd man/cdesc_char.Rd man/write_tbl.Rd man/write_gctx_meta.Rd man/GCT-class.Rd man/melt_gct.Rd man/annotate_gct.Rd man/update_gctx.Rd man/is.wholenumber.Rd man/distil.Rd man/subset_to_ids.Rd man/merge_with_precedence.Rd man/read_gctx_ids.Rd man/process_ids.Rd man/kd_gct.Rd man/align_matrices.Rd man/gene_set.Rd man/parse_gmx.Rd man/check_dups.Rd man/rank_gct.Rd man/transpose_gct.Rd man/read_gctx_meta.Rd man/fix_datatypes.Rd man/write_gct.Rd man/append_dim.Rd man/ids.Rd man/meta.Rd man/merge_gct.Rd man/write_gctx.Rd man/extract_gct.Rd man/ds.Rd man/write_gmt.Rd man/parse_gctx.Rd man/robust_zscore.Rd man/GCT.Rd man/parse_grp.Rd man/check_colnames.Rd man/subset_gct.Rd man/parse_gmt.Rd

inst/script/data.txt

inst/extdata/query_up.gmt

inst/extdata/lm_epsilon_n978.grp

inst/extdata/modzs_n25x50.gct

inst/extdata/lm_probes.gmx

inst/extdata/modzs_n25x50.gctx

inst/extdata/example.lxb

inst/doc/tutorial.Rmd

inst/doc/tutorial.html

inst/doc/tutorial.R

data/cdesc_char.RData

data/ds.RData

data/gene_set.RData

data/kd_gct.RData

build/vignette.rds

vignettes/tutorial.Rmd

cmapR documentation built on Dec. 12, 2020, 2 a.m.