| align_matrices | Align the rows and columns of two (or more) matrices |
| annotate_gct | Add annotations to a GCT object |
| append_dim | Append matrix dimensions to filename |
| cdesc_char | An example table of metadata, as would be parsed from or... |
| check_colnames | Check whether 'test_names' are columns in the 'data.frame' df |
| check_dups | Check for duplicates in a vector |
| distil | Collapse the rows or columns of a matrix using weighted... |
| ds | An example of a GCT object with row and column metadata and... |
| extract_gct | Exract elements from a GCT matrix |
| fix_datatypes | Adjust the data types for columns of a meta data frame |
| GCT | Initialize an object of class 'GCT' |
| GCT-class | An S4 class to represent a GCT object |
| gene_set | An example collection of gene sets as used in the Lamb 2006... |
| ids | Extract the or set row or column ids of a GCT object |
| is.wholenumber | Check if x is a whole number |
| kd_gct | An example GCT object of knockdown experiments targeting a... |
| lxb2mat | Read an LXB file and return a matrix |
| mat | Extract or set the matrix of GCT object |
| melt_gct | Transform a GCT object in to a long form 'data.table' (aka... |
| merge_gct | Merge two GCT objects together |
| merge_with_precedence | Merge two 'data.frame's, but where there are common fields... |
| meta | Extract the or set metadata of a GCT object |
| na_pad_matrix | Pad a matrix with additional rows/columns of NA values |
| parse_gctx | Parse a GCTX file into the workspace as a GCT object |
| parse_gmt | Read a GMT file and return a list |
| parse_gmx | Read a GMX file and return a list |
| parse_grp | Read a GRP file and return a vector of its contents |
| process_ids | Return a subset of requested GCTX row/colum ids out of the... |
| rank_gct | Convert a GCT object's matrix to ranks |
| read_gctx_ids | Read GCTX row or column ids |
| read_gctx_meta | Parse row or column metadata from GCTX files |
| robust_zscore | Compoute robust z-scores |
| subset_gct | Subset a gct object using the provided row and column ids |
| subset_to_ids | Do a robust 'data.frame' subset to a set of ids |
| threshold | Threshold a numeric vector |
| transpose_gct | Transpose a GCT object |
| update_gctx | Update the matrix of an existing GCTX file |
| write_gct | Write a GCT object to disk in GCT format |
| write_gctx | Write a GCT object to disk in GCTX format |
| write_gctx_meta | Write a 'data.frame' of meta data to GCTX file |
| write_gmt | Write a nested list to a GMT file |
| write_grp | Write a vector to a GRP file |
| write_tbl | Write a 'data.frame' to a tab-delimited text file |
