parse_gmt: Read a GMT file and return a list
In cmapR: CMap Tools in R
Description
Usage
Arguments
Details
Value
See Also
Examples
Description
Read a GMT file and return a list
Usage
1
2
3
Arguments
...
arguments passed on to parse_gmt
fname
the file path to be parsed
Details
parse_gmt returns a nested list object. The top
level contains one list per row in fname. Each of
these is itself a list with the following fields:
- head: the name of the data (row in fname)
- desc: description of the corresponding data
- len: the number of data items
- entry: a vector of the data items
Value
a list of the contents of fname. See details.
See Also
Visit http://clue.io/help for details on the GMT file format
Other CMap parsing functions:
lxb2mat(),
parse.gmx(),
parse.grp(),
write_gmt(),
write_grp()
Examples
1
2
3
gmt_path <- system.file("extdata", "query_up.gmt", package="cmapR")
gmt <- parse_gmt(gmt_path)
str(gmt)
cmapR documentation built on Dec. 12, 2020, 2 a.m.
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Description Usage Arguments Details Value See Also Examples
Description
Read a GMT file and return a list
Usage
1 2 3 |
Arguments
... |
arguments passed on to |
fname |
the file path to be parsed |
Details
parse_gmt returns a nested list object. The top
level contains one list per row in fname. Each of
these is itself a list with the following fields:
- head: the name of the data (row in fname)
- desc: description of the corresponding data
- len: the number of data items
- entry: a vector of the data items
Value
a list of the contents of fname. See details.
See Also
Visit http://clue.io/help for details on the GMT file format
Other CMap parsing functions:
lxb2mat(),
parse.gmx(),
parse.grp(),
write_gmt(),
write_grp()
Examples
1 2 3 | gmt_path <- system.file("extdata", "query_up.gmt", package="cmapR")
gmt <- parse_gmt(gmt_path)
str(gmt)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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