Description Usage Arguments Details Value See Also Examples
Initialize an object of class GCT
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mat |
a matrix |
rdesc |
a |
cdesc |
a |
src |
path to a GCT file to read |
rid |
vector of character identifiers for rows |
cid |
vector of character identifiers for columns |
matrix_only |
logical indicating whether to read just the matrix
data from |
If mat
is provided, rid
and cid
are treated as
the row and column identifiers for the matrix and are assigned to the
rid
and cid
slots of the GCT
object.
If mat
is not provided but src
is provided,
rid
and cid
are treated as filters. Data will be read from
the file path provided to src
and will then be restricted to the
character ids or integer indices provided to rid
and cid
.
In a similar manner, matrix_only
controls whether the
row and column metadata are also read from the src
file path.
a GCT
object
Other GCTX parsing functions:
append.dim()
,
fix.datatypes()
,
parse.gctx()
,
process_ids()
,
read.gctx.ids()
,
read.gctx.meta()
,
write.gctx.meta()
,
write.gctx()
,
write.gct()
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