write_gctx: Write a GCT object to disk in GCTX format

In cmapR: CMap Tools in R

Description

Write a GCT object to disk in GCTX format

Usage

write.gctx(...)

write_gctx(
  ds,
  ofile,
  appenddim = TRUE,
  compression_level = 0,
  matrix_only = FALSE,
  max_chunk_kb = 1024
)

Arguments

...	arguments passed on to write_gctx
ds	a GCT object
ofile	the desired file path for writing
appenddim	boolean indicating whether the resulting filename will have dimensions appended (e.g. my_file_n384x978.gctx)
compression_level	integer between 1-9 indicating how much to compress data before writing. Higher values result in smaller files but slower read times.
matrix_only	boolean indicating whether to write only the matrix data (and skip row, column annotations)
max_chunk_kb	for chunking, the maximum number of KB a given chunk will occupy

Value

silently returns NULL

See Also

Other GCTX parsing functions: GCT, append.dim(), fix.datatypes(), parse.gctx(), process_ids(), read.gctx.ids(), read.gctx.meta(), write.gctx.meta(), write.gct()

Examples

# note this will create a GCT file in your current directory
write_gctx(ds, "dataset")

cmapR documentation built on Dec. 12, 2020, 2 a.m.