Description Usage Arguments Details Value See Also Examples
Return a subset of requested GCTX row/colum ids out of the universe of all ids
1 | process_ids(ids, all_ids, type = "rid")
|
ids |
vector of requested ids. If |
all_ids |
vector of universe of ids |
type |
flag indicating the type of ids being processed |
This is a low-level helper function which most users will not need to access directly
a list with the following elements
ids
: a character vector of the processed ids
idx
: an integer list of their corresponding indices in all_ids
Other GCTX parsing functions:
GCT
,
append.dim()
,
fix.datatypes()
,
parse.gctx()
,
read.gctx.ids()
,
read.gctx.meta()
,
write.gctx.meta()
,
write.gctx()
,
write.gct()
1 2 3 4 | gct_file <- system.file("extdata", "modzs_n25x50.gctx", package="cmapR")
ids <- read_gctx_ids(gct_file)
processed_ids <- cmapR:::process_ids(ids[1:10], ids)
str(processed_ids)
|
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