API for coRdon
Codon Usage Analysis and Prediction of Gene Expressivity
| Global functions | |
|---|---|
| .barplot | Source code |
| .bplot | Source code |
| .codonTable | Source code |
| .countsbyaa | Source code |
| .effNc | Source code |
| .enrichment | Source code |
| .genCode | Source code |
| .makedt | Source code |
| .makemat | Source code |
| .maplot | Source code |
| .normFrequencies | Source code |
| .normSetFrequencies | Source code |
| B | Man page |
| B,codonTable-method | Man page |
| Bplot | Man page |
| Bplot,character,character,matrix-method | Man page |
| Bplot,numeric,numeric,missing-method | Man page |
| CAI | Man page |
| CAI,codonTable-method | Man page |
| E | Man page |
| E,codonTable-method | Man page |
| ENC | Man page |
| ENC,codonTable-method | Man page |
| ENCprime | Man page |
| ENCprime,codonTable-method | Man page |
| Fop | Man page |
| Fop,codonTable-method | Man page |
| GCB | Man page |
| GCB,codonTable-method | Man page |
| HD59 | Man page |
| HD59_KO | Man page |
| HD59_PATHWAYS | Man page |
| LD94 | Man page |
| LD94_KO | Man page |
| LD94_PATHWAYS | Man page |
| MCB | Man page |
| MCB,codonTable-method | Man page |
| MELP | Man page |
| MELP,codonTable-method | Man page |
| MILC | Man page |
| MILC,codonTable-method | Man page |
| RPKOs | Man page |
| SCUO | Man page |
| SCUO,codonTable-method | Man page |
| [,codonTable-method | Man page |
| [[,codonTable-method | Man page |
| coRdon | Man page |
| coRdon-package | Man page |
| codonCounts | Man page |
| codonCounts,codonTable-method | Man page |
| codonTable | Man page |
| codonTable,DNAStringSet-method | Man page |
| codonTable,data.frame-method | Man page |
| codonTable,matrix-method | Man page |
| codonTable-class | Man page |
| codonUsage | Man page |
| codonUsage-expressivity | Man page |
| contable | Man page |
| contable,crossTab-method | Man page |
| crossTab | Man page |
| crossTab,character,numeric-method | Man page |
| crossTab-class | Man page |
| enrichBarplot | Man page |
| enrichBarplot,AnnotatedDataFrame-method | Man page |
| enrichBarplot,list-method | Man page |
| enrichMAplot | Man page |
| enrichMAplot,AnnotatedDataFrame-method | Man page |
| enrichMAplot,list-method | Man page |
| enrichMatrix | Man page |
| enrichMatrix,list-method | Man page |
| enrichment | Man page |
| enrichment,crossTab-method | Man page |
| genCode | Man page |
| genCode,ANY-method | Man page |
| genCode-class | Man page |
| getCOG | Man page |
| getCOG,codonTable-method | Man page |
| getID | Man page |
| getID,codonTable-method | Man page |
| getKO | Man page |
| getKO,codonTable-method | Man page |
| getSeqAnnot | Man page |
| getSeqAnnot,crossTab-method | Man page |
| getVariable | Man page |
| getVariable,crossTab-method | Man page |
| getlen | Man page |
| getlen,codonTable-method | Man page |
| intraBplot | Man page |
| intraBplot,codonTable,codonTable-method | Man page |
| length,codonTable-method | Man page |
| length,crossTab-method | Man page |
| length-codonTable | Man page |
| length-crossTab | Man page |
| make.contable | Source code |
| readSet | Man page Source code |
| reduce.contable | Source code |
| reduceCrossTab | Man page |
| reduceCrossTab,crossTab,character-method | Man page |
| setCOG | Man page |
| setCOG,codonTable-method | Man page |
| setKO | Man page |
| setKO,codonTable-method | Man page |
| show,codonTable-method | Man page |
| show,crossTab-method | Man page |
| show-codonTable | Man page |
| show-crossTab | Man page |
| subset.codonTable | Man page Source code |
