countMatrix: countMatrix

Description Usage Arguments Details Value Note Author(s) References Examples

View source: R/methods-CuffFeatureSet.R View source: R/methods-CuffData.R

Description

Retrieve count values as gene by condition matrix

Usage

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## S4 method for signature 'CuffData'
countMatrix(object,fullnames=FALSE,sampleIdList)
## S4 method for signature 'CuffData'
repCountMatrix(object,fullnames=FALSE,repIdList)

Arguments

object

An object of class ('CuffData','CuffFeatureSet','CuffGeneSet','CuffGene',or 'CuffFeature')

fullnames

A logical value whether or not to concatenate gene_short_name and tracking_id values (easier to read labels)

sampleIdList

A vector of sample names to subset the resulting matrix.

repIdList

A vector of replicate names to subset the resulting replicate matrix.

Details

None.

Value

A feature x condition matrix of count values.

Note

None

Author(s)

Loyal A. Goff

References

None.

Examples

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cummeRbund documentation built on May 2, 2018, 3:12 a.m.